Data sharing

Description

OpenImadis stands for Open Image Discovery: A platform for Image Life Cycle Management. It was previously called CID iManage (for Curie Image Database).

No image data conversions, no duplication.

- Uploads data to a secure server in the original format

- Unique id for data

Supports sharing and collaboration with access control

- Allows users to upload, view, update or download data based on their access privileges

Supports multiple ways of attaching meta-information

- Annotations, comments and file attachments

-Analysis results as query-able visual objects

Supports Archiving (data moving to another long-term storage but still searchable)

Facilitates custom visualization and analysis

- Access data from preferred analysis and visualization tools

- Access relevant bits of data to build efficient web and mobile application

Facilitate easy access to analysis and visualization applications hosted on other servers

- Run analysis on dedicated compute clusters

- Access applications hosted and published by other users

Highly Scalable

- Supports on-the-fly addition of server nodes to scale concurrent usage

 

 

openImadis
Description

ScientiFig is a free tool to help you create, format or reformat scientific figures. It comes either as a stand alonesoftware, either as a Fiji/IJ plugin.

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scientifig
Description

Shiny is an R package that makes it easy to build interactive web apps straight from R.

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Description

This plugin achieves easy creation of image figures for publications, reports, projects.

  • Easy-to-design interactive figure layout.

  • Visually assign image content to panels.

  • High-quality image scaling and rotation.

  • Easy and consistent panel labels and scale bars.

  • Each panel has it's original datasource's properties and tracks achieved image processing.

  • Save and re-open editable figures.

  • Export as standard image formats with textual description of each panel history.

Compared to Make montage, the plugin adds more flexibility to montage creation: Easy-to-design interactive figure layout. Visually assign image content to panels. High-quality image scaling and rotation. Easy and consistent panel labels and scale bars. Each panel has it's original data source's properties and tracks achieved image processing. Save and re-open editable figures. Export as standard image formats with textual description of each panel history. 

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FigureJ
Description

MyTardis is free and open-source data management software. It facilitates annotation, sharing and archiving of data and metadata collected from different modalities. It focuses on integration with scientific instruments, instrument facilities and research storage and computing infrastructure; to address the challenges of data storage, data access, collaboration and data publication. It is currently being used to capture data from areas such as optical microscopy, electron microscopy, medical imaging, protein crystallography, neutron and X-ray scattering, flow cytometry, genomics and proteomics. ## Key features * Easy instrument integration. * Discipline specific: MX, Imaging, Microscopy, Genomics ... * Wide range of data formats & supported instruments. * Secure cloud data storage & access. * Simple data sharing. * Researcher controlled data publishing. * APIs for programmatic access to data and metadata.

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