Filament tracing

Filament tracing operations are image analysis operations in which there is an image of a filamentous structure (it may be a tree-like structure, a filament network or a agglomeration of single 'stick-like' filaments) as input and outputs data that represent the filament, most commonly a skeleton representation of the filaments and their diameters or surfaces.

Synonyms
Tubular structure extraction
biofilament tracing
Curvilinear structure reconstruction
Curvilinear structure detection
neuron image analysis
neuron reconstruction
Description

3D Neuron Tracing with a Dockerized version of Vaa3D MOST Raytracer.

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Description

3D Neuron Tracing using Dockerized version of Vaa3D Minimum Spanning Tree (MST).

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Description

Rivuletpy dockerised workflow for BIAFLOWS.

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Description

Vaa3d All-Path-Pruning 2.0 (APP2) dockerised workflow for BIAFLOWS.

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Description

Fiji plugin for detecting, tracking and quantifying filopodia