3D Segmentation & visualization of nanoparticles attached to the surface of red blood cells

image from the paper here:https://pubs.rsc.org/en/content/articlelanding/2019/nr/c8nr09960j
Type
Workflow
Author
André Dias, Marco Werner, Kevin R. Ward, Jean-Baptiste Fleuryd and Vladimir A. Baulin
Requires
ImageJ
Execution Platform
Linux
Mac
Windows
Programming Language
ImageJ Macros
Supported image dimension
3D
Interaction Level
Automated
License/Openness
Free and open source
has function
Object feature extraction
has topic
Fluorescence microscopy
has biological terms
nanoparticles
blood cells
Additional keywords
High through-put
Entry Curator
czhang
Post date
06/21/2019 - 13:59
Last modified
04/29/2023 - 23:12
Workflow steps
Step 1: 2D mask for segmentation of stack
Auto Local Threshold
Image segmentation
3D Segmentation: getting statistics about voxels
Cell segmentation and measurements
Volume rendering
Step 3: 3D Alignment to correct 3D shift
Correct 3D drift
Alignment construction
Download Page
ImageJ macro files
Reference Publication Link
High-throughput 3D visualization of nanoparticles attached to the surface of re…