automated structures analysis program (ASAP)

Type
Workflow
Execution Platform
Mac
Windows
Implementation Type
standalone
Programming Language
Matlab
Supported image dimension
2D
Interaction Level
Semi-automated
License/Openness
Free and open source
License
MIT
Description

ASAP allows to automatically detect, classify and quantify structures acquired by super resolution microscopy. 

Post date
10/18/2019 - 13:01
Last modified
10/18/2019 - 13:10
Workflow steps
Step 1: Identification of structures
MATLAB
Object detection
Step 2: Geometrical analysis of structures
MATLAB
Image analysis
Step 3: Classifier Training
MATLAB
Classification
Step 4: Classification of structures
MATLAB
Object classification
Step 5: Cluster, statistical and visual analysis
MATLAB
Image analysis
Download Page
https://github.com/jdanial/ASAP
Documentation Link
https://github.com/jdanial/ASAP/tree/master/Guides
Reference Publication Link
https://www.nature.com/articles/s41592-019-0472-1
Usage Example Link
https://github.com/jdanial/ASAP/tree/master/Examples