Image segmentation

Image segmentation is (one of) the (few) concept(s) on the border between Image (pre)processing (Image->Image) and Image analysis (Image->Data).

LBADSA

Component
Description

LBADSA is based on the fitting of the Young-Laplace equation to the image data to measure drops.

has topic
Bioimage informatics
has function
Image segmentation

DragonFly

Collection
Description

Dragonfly is a software platform for the intuitive inspection of multi-scale multi-modality image data. Its user-friendly experience translates into powerful quantitative findings with high-impact visuals, driven by nuanced easy-to-learn controls.

For segmentation: It provides an engine fior machine Learning, Watershed and superpixel methods, support histological data .

It offers a 3D viewer, and python scripting capacities .

It is free for reserach use, but not for commercial usage.

has topic
Digital histology
Electron microscopy
Light microscopy
Multimodal imaging
Machine learning
has function
Image feature detection
Image segmentation
Interactive segmentation
Object feature extraction
Shape features
Visualisation
Image visualisation
Volume rendering
DragonFly

Mask-RCNN

Collection
Description

This is an implementation of Mask R-CNN on Python 3, Keras, and TensorFlow. The model generates bounding boxes and segmentation masks for each instance of an object in the image. It's based on Feature Pyramid Network (FPN) and a ResNet101 backbone.

has topic
Phase contrast microscopy
has function
Image segmentation
Object detection

Nuclei Segmentation (Mask-RCNN)

Workflow
Description

NEUBIAS-WG5 workflow for nuclei segmentation using Mask-RCNN. The workflow uses Matterport Mask-RCNN. Keras implementation. The model was trained with Kaggle 2018 Data Science Bowl images.

has topic
Machine learning
has function
Image segmentation
Object detection
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