Nuclei Segmentation (Python)

Type

Author

Tosí, Sébastien

Requires

Execution Platform

Programming Language

Supported image dimension

Interaction Level

License/Openness

Description

This workflow processes images of cells with discernible nuclei and outputs a binary mask containing where nuclei are detected.

has function

has biological terms

Entry Curator

Post date

02/26/2019 - 12:44

Last modified

05/02/2023 - 11:59

Workflow steps

Step 1: Run Gaussian Blur

Step 2: Run Adaptive Threshold

Step 3: Get Euclidean Distance Transform

Step 4: Run Gaussian Blur in Distance Transform

Step 5: Run Find Local Maxima

Step 6: Run watershed segmentation with the seeds of the local maxima

Download Page

has comparison