These slides were shown in the "On-the-fly image processing session with Python and napari" session by Robert Haase of the Smart Microscopy Workshop at the Center for Cellular imaging at the University of Gothenbourg in May 2021.
In this session, we will cover the basics of ImageJ macro programming using a simple example: how to quantify signal enrichment at the nuclear rim? Trainees will (re)discover how to record actions, plan a workflow and organise their code. This session will alternate presentation of technical points, to be directly applied during practical exercises. The macro will progressively complexify as new notions are taught.
