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                Name Category Image requires Type interaction level License/Openness has function has topic
                BBBC002v1 Dataset Drosophila Kc167 cells
                EBImage Software EBImage Bioconductor Collection Manual Free and open source Image analysis, Image segmentation, Image processing, Geometrical transformation, Morphological operation Bioimage informatics, High content screening
                (Z,T) Hyperstack Stitcher Software ImageJ Component Semi-automated Free and open source Alignment construction, Data handling, Image stitching Bioimage informatics, Microscopy
                (Z,T,C) Stitcher Software ImageJ Component Semi-automated Free and open source Image stitching Microscopy
                2-D Colocalisation in Cells Software CellProfiler, CellProfiler Workflow Automated Free and open source Colocalisation analysis, Object-based colocalisation
                2D and 3D mitochondrial shape analysis and network properties Software ImagePro Workflow Automated Commercial Analysis, Image segmentation Confocal fluorescence microscopy
                2D and 3D tracking based on global cost function optimization Software ImageJ, MTrackJ, ImageScience.jar, Jama, Tracking2.0 Workflow Automated Free and open source Object tracking, Particle tracking, Trajectory analysis Bioimage informatics, Machine learning
                2D brain slice region annotation: SliceMap Software Example: SliceMaps brain region segmentation Workflow Semi-automated Free and open source Image registration, Image segmentation Widefield microscopy, Fluorescence microscopy
                2D bright field yeast cell images with ground truth annotations Dataset 2D bright field yeast cell images
                2D cell tracking and analysis of morphological dynamics Software ImageJ, QuimP Workflow Semi-automated I do not know Cell segmentation, Active contours, Cell tracking
                2D Gaussian fitting macro (Fiji/ImageJ) for multiple signals. Software ImageJ, Fiji Workflow Semi-automated Free and open source Image analysis, Single molecule localisation Bioimage informatics, Single molecule localization microscopy
                2D image processing and Data analysis with Matlab Training Material
                2D spots counting using KNIME Software KNIME Image Processing and Analysis Workflow Automated Free and open source Spot detection
                2D tracking using KNIME and Fiji Software KNIME Image Processing and Analysis, Fiji Workflow Semi-automated Free and open source Object tracking
                2D-3D distributed parallel region competition segmentation Software need a thumbnail Component Automated Free and open source Image segmentation Bioimage informatics
                3-D Density Kernel Estimation Software Jupyter notebook, Python, VIGRA, scikit-learn (sklearn), scikit-image Workflow Manual Free and open source Pixel classification, Prediction and recognition, Object counting Confocal microscopy, Machine learning
                3D Active Meshes (Icy) Software Spot detection utilities, Icy HK-Means, EzPlug SDK, Icy Protocols SDK Component Automated Free and open source Cell segmentation, Cell tracking Bioimage informatics
                3D affine transformation based on paired points Software Fiji Component Automated Free and open source Affine transformation, Linear transformation
                3D Area Software need a thumbnail Processing Component Automated I do not know
                3D cell tracking and quantification of shape changes Software need a thumbnail MATLAB Workflow Automated I do not know Cell tracking