Object-based colocalisation

Synonyms
Object-based colocalization
Object-based co-localisation

Point Cloud Analyst (PoCA)

Collection
Description

SMLM is a mature but still growing field, which still lacks efficient and user-friendly analysis and visualization software platform adapted for both users and developers. We here introduce PoCA, a powerful open-source software platform dedicated to the visualization and analysis of 2D and 3D point-cloud data. PoCA allows manipulating large datasets, and integrates a plugin architecture, a native batch analysis engine and a Python code interpreter, facilitating both the analysis of data and the integration of new methods.

has topic
Super-resolution microscopy
Single molecule localization microscopy
has function
Analysis
Colocalisation analysis
Object-based colocalisation
Cell segmentation
Interactive segmentation
Visualisation
Visualization, segmentation and exploration of 3D SMLM data

3D object based colocalisation

Submitted by Perrine on Fri, 02/22/2019 - 09:21

A user comes to the Facility: “I’ve got a set of 2 channels 3D images where objects are overlapping. I think the overlap might not be the same from object to object. I would like to quantify the physical overlap and get a map of quantifications”. Your mission: write the appropriate macro, knowing a user might always change her/his mind, and ask for more… Ready to take on the challenge ?

Aivia - Aivia Cloud - Aivia Web

Collection
Workflow
has topic
Machine learning
has function
Analysis
Frequency analysis
Image analysis
Colocalisation analysis
Object-based colocalisation
Pixel-based colocalisation
Filament tracing
Image feature detection
Image segmentation
Cell segmentation
Pixel classification
Neuron image analysis
Object classification
Object counting
Texture extraction
Object tracking
Cell tracking
Particle tracking
Annotation
Classification
Editing
Image deconvolution
Visualisation
Image visualisation
Volume rendering
Plotting

MIPAV

Collection
Description

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via the internet) can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders.

has topic
Bioimage informatics
Imaging
Magnetic resonance imaging
Computerized tomography
has function
Image registration
Image analysis
Object-based colocalisation
Image segmentation
Image thresholding
Pixel classification
Smoothing
Image visualisation
Image feature detection
Colocalisation analysis
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