Visualisation

3D reslicing and threshold-enabled 3D visualization.

A TrackProcessor that allows the user to monitor, visualize, and export, the intensity profile of tracks in time lapse sequences of 2D images.

Plugin designed to allow easy semi-automatic tracing of neurons or other filament-like structures (e.g., microtubules, blood vessels) through either 2D images or 3D image stacks. Data can be imported and exported in SWC files for interaction with other software, or details of the traces can be exported as CSV files for analysis in spreadsheets or statistical software.

This plugin is included in Fiji by default.

Displays a live tool tip on the current focused ROI in an image.

The tooltip displays the following informations about the ROI:
– position and size.
– number of interior points and contour points.
– perimeter, area, surface area, volume.
– min, max, mean intensity.

This plugin is a daemon plugin, that means plugin is automatically loaded when Icy starts.