nanoFeatures

GUI first tab to browse and input files, select input type and check extra filters if needed.
Type
Component
Author
Cristina Izquierdo-Lozano orcid.org/0000-0003-0917-8860
Requires
Matlab Image Processing Toolbox
Matlab Computer Vision System Toolbox
MATLAB
Execution Platform
Linux
Mac
Windows
Implementation Type
plugin
Programming Language
Matlab
is compatible with
ThunderSTORM
Supported image dimension
2D
multi-channel
Interaction Level
Semi-automated
License/Openness
Free and open source
License
Attribution-NonCommercial-ShareAlike 4.0 International
Description

MATLAB app to characterize nanoparticles imaged with super-resolution microscopy. nanoFeatures will read text and csv files from the NIKON and ONI microscopes and from the ThunderSTORM Fiji plugin, then cluster the localizations and filter by size and sphericity and finally output nanoparticle features like size, aspect ratio, and number of localizations per cluster (total and for each channel).

has function
Operation
Analysis
Image analysis
Image feature detection
Single molecule localisation
Object feature extraction
Shape features
Clustering
has topic
Bioimage informatics
Imaging
Microscopy
Super-resolution microscopy
Single molecule localization microscopy
Machine learning
Unsupervised learning
has biological terms
nanoparticles
Entry Curator
crizloz
Post date
05/24/2023 - 13:15
Last modified
05/24/2023 - 17:34
Download Page
github