Collection

A collection is a software that encapsulate a set of bioimage components and/or workflows.

PYME

Collection
Description

The PYthon Microscopy Environment is an open-source package providing image acquisition and data analysis functionality for a number of microscopy applications, but with a particular emphasis on single molecule localisation microscopy (PALM/STORM/PAINT etc ...). The package is multi platform, running on Windows, Linux, and OSX.

It comes with 3 main modules:

  • PYMEAcquire - Instrument control and simulation
  • dh5view - Image Data Analysis and Viewing
  • VisGUI - Visualising Localization Data Sets
has topic
Bioimage informatics
has function
Single molecule localisation
Visualisation

Filopodyan

Collection
Description

Fiji plugin for detecting, tracking and quantifying filopodia

has topic
Fluorescence microscopy
has function
Image analysis
Filament tracing
Object tracking
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