FishFeats

Type
Component
Author
Letort Gaëlle orcid.org/0000-0002-5866-0322
Foley Tanya
Mignerey Ilona
Bally-Cuif Laure orcid.org/0000-0001-6611-6274
Dray Nicolas orcid.org/0000-0002-2632-6004
Execution Platform
Linux
Mac
Windows
Implementation Type
library
plugin
Programming Language
Python
is compatible with
Napari image viewer
Supported image dimension
3D
multi-channel
Interaction Level
Semi-automated
License/Openness
Free and open source
License
BSD-3-Clause License
Description

FishFeats: napari plugin to perform quantification of multimodal labeling at the single-cell level in 3D tissues.

FishFeats allows to perform together in the same pipeline several analysis to quantify epithelia cells in 3D tissue, analysing cell morphology, nuclei, immuno-staining or RNA expression. The plugin allows flexibility to let the user choose the relevant step for a specific biological question.

 

has function
Analysis
Image segmentation
Cell segmentation
Object classification
has biological terms
epithelia
nuclei
RNAFish
Entry Curator
gletort
Post date
06/17/2026 - 13:08
Last modified
06/17/2026 - 13:23
Download Page
FishFeats github repository
Documentation Link
FishFeats documentation
Reference Publication Link
FishFeats: streamlined quantification of multimodal labeling at the single-cell…
DOI link
https://doi.org/10.1093/bioinformatics/btag105
Backlinks