Image processing

Synonyms
Image pre-processing
Image filtering
Image preprocessing
Image postprocessing
Image post-processing
Image manipulation

GPU-Accelerating ImageJ Macro Image Processing Workflows Using CLIJ

Submitted by czhang on Thu, 04/27/2023 - 09:55

This chapter is part of this book. The chapter introduces GPU-accelerated image processing in ImageJ/Fiji. The reader is expected to have some pre-existing knowledge of ImageJ Macro programming. Core concepts such as variables, for-loops, and functions are essential. The chapter provides basic guidelines for improved performance in typical image processing workflows.

EVER-ImageJ-Plugin

Component
Description

Removal of heterogeneous background from image data of single-molecule localization microscopy, using extreme value-based emitter recovery (EVER).

Quote:

EVER requires no manual adjustment of parameters and has been implemented as an easy-to-use ImageJ plugin that can immediately enhance the quality of reconstructed super-resolution images. This method is validated as an efficient way for robust nanoscale imaging of samples with heterogeneous background fluorescence, such as thicker tissue and cells.

has topic
Single molecule localization microscopy
has function
Image processing

Image Analysis Training Resources

Submitted by Perrine on Wed, 06/30/2021 - 14:15

This is a resource for image analysis training material, with a focus on research in the life sciences.

Currently, this resource is mainly meant to serve image analysis trainers, helping them to design courses. However, we might add more text (or videos) to the material such that it could also be used by students for self-directed study.

Phindr3D

Workflow
Description

Phindr3D is a comprehensive shallow-learning framework for automated quantitative phenotyping of three-dimensional (3D) high content screening image data using unsupervised data-driven voxel-based feature learning, which enables computationally facile classification, clustering and data visualization.

Please see our GitHub page and the original publication for details.

has topic
Bioimage informatics
High content screening
Machine learning
Statistics
has function
Analysis
Image analysis
Image classification
Image feature detection
Neuron image analysis
Classification
Clustering
Image processing
Pattern recognition
Visualisation
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