Visualisation

Re-occurs among biii.info tags (visualisation, rendering, viewer, classification, ...)

Synonyms

Plotting

Tumor Blood Vessels: 3D Tubular Network Analysis

In this session, we will implement a simple ImageJ macro to segment and analyze the blood vessel network of a subcutaneous tumor. The analysis is fully performed in 3D, and possible strategies to extract statistics of the network geometry and interactively visualize the results are also discussed and implemented.

Hands-on exercises for learning Imaris

Imaris, Visualization, spots segmentation, surfaces segmentation, colocalization, spots tracking, Batch, plotting graphs with Vantage.

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Big Data & 3D Visualization

Lecture Slides

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CellProfiler Analyst CPA

Collection

Description

CellProfiler Analyst (CPA) allows interactive exploration and analysis of data, particularly from high-throughput, image-based experiments. Included is a supervised machine learning system which can be trained to recognize complicated and subtle phenotypes, for automatic scoring of millions of cells. CPA provides tools for exploring and analyzing multidimensional data, particularly data from high-throughput, image-based experiments analyzed by its companion image analysis software, CellProfiler.

has topic

High content screening

has function