Filament Tracing (ImageJ)

need a thumbnail
Type
Workflow
Author
Tosí, Sébastien
Requires
ImageJ
Execution Platform
Linux
Mac
Windows
Implementation Type
plugin
Programming Language
Java
Supported image dimension
3D
Interaction Level
Automated
License/Openness
Free and open source
has function
Filament tracing
Smoothing
Skeletonisation
has biological terms
filament
Entry Curator
lascholz
Post date
02/25/2019 - 12:49
Last modified
05/01/2023 - 19:03
Workflow steps
Step 1: Run Gaussian Blur 3D
Gaussian Blur 3D (ImageJ)
Feature enhancement
Step 2: Run image Threshold
Auto Threshold
Image thresholding
Step 3: Skeletonize binary image
Skeletonize3D
Skeletonisation
Step 4: Analyze Skeleton
ImageJ Analyze Skeleton
Image analysis
Download Page
Neubias BIAFLOWS workflow of Filament Tracing 3D with ImageJ
has comparison
BIAFLOWS Vessel Tracing 3D project