Linux

OligoMacro Toolset, is an ImageJ macro-toolset aimed at isolating oligodendrocytes from wide-field images, tracking isolated cells, characterizing processes morphology along time, outputting numerical data and plotting them. It takes benefit of ImageJ built-in functions to process images and extract data, and relies on the R software in order to generate graphs.

Wavelet Toolbox™ provides apps and functions for the time-frequency analysis of signals and multiscale analysis of images.

ASAP allows to automatically detect, classify and quantify structures acquired by super resolution microscopy. 

This plugin ships automated methods for extracting trajectories of multiples objects in a sequence of 2D or 3D images. Up to version 2 it was known as the ‘Probabilistic particle tracker’ plugin.