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A standalone cell tracking software for single cell migration. Tracking of cells in tissue was also done in Drosophila germband.

The ImageJFX Project aims to create a new user interface for the software ImageJ in order to ease scientific image analysis. While keeping the core components of ImageJ, ImageJFX brings scientists closer to their goal by making the interface clearer for beginners and more practical for advanced users.

QuantCenter is the framework for 3DHISTECH image analysis applications. with the goal of helping the pathologists to diagnose in an easier way. QuantCenter, is optimized for whole slide quantification. It has a linkable algorithm concept that tries to provide an easy-to-use and logical workflow. The user has different quantification modules that he or she could link one after other to fine-tune or to speed up the analysis.

COLORLAB is a component for processing, representing and reproducing color in a MATLAB environment. Among others, some of the functionalities it makes able to: -Represent the color content of any image in chromatic diagrams and tristimulus spaces in any system of primaries. -Compute advanced color descriptions of any image using several color appearance models (CIELab, CIEluv, ATD, Rlab, LLab, SVF and CIECAM). An userguide is provided.

We propose to use a kernel density estimation (KDE) based approach for classification. This non-parametric approach intrinsically provides the likelihood of membership for each class in a principled manner. The implementation was used in Ghani2016. Any papers using this code should cite Ghani2016 accordingly. The software has been tested under Matlab R2013b.

Sample Data: Annotated two-photon images of dendritic spines