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Name Category Image requires Type interaction level License/Openness has function has topic
3D-DAOSTORM Software need a thumbnail Component Semi-automated Free and open source Single molecule localisation Super-resolution microscopy, Single molecule localization microscopy
3DeeCellTracker Software Overall procedures of our method (Wen et al. eLife, 2021–Figure 1) Tensorflow, Jupyter notebook Workflow Semi-automated Free and open source Cell segmentation, Cell tracking Bioimage informatics
3Dscript Software ImageJ Collection Manual Free and open source Image visualisation, Volume rendering
3View import list Software ImageJ, TrakEM2 Component Automated Free and open source Object tracking, Data handling Serial block-face scanning electron microscopy
@msdanalyzer Software Examples of tracks to perform MSD analysis. MATLAB Curve Fitting Toolbox, MATLAB Component Automated, Semi-automated Free and open source Trajectory analysis Live sample imaging, Statistics
A simple MSER based segmentation tool for spot detection in 2/3/4D. Software Component Automated Free and open source
A Unifying Parametric Framework for 2D Steerable Wavelet Transforms Software need a thumbnail MATLAB Collection Automated Free and open source Frequency analysis, Image processing Bioimage informatics
ABBA Software need a thumbnail ImageJ Collection Semi-automated Free and open source Image registration
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ABSnake Software need a thumbnail ImageJ Component Automated Free and open source Image segmentation, Active contours Bioimage informatics
acquiarium Software Acquiarium functionalities diagram Collection I do not know Free and open source Spot detection, Chromatic aberration correction, Geometric distortion correction, Illumination correction High content screening, Fluorescence microscopy, Confocal fluorescence microscopy
ActionBar (ImageJ) Software ActionBar screenshot ImageJ Component Manual Free and open source Data handling
Active Cells 3D Software need a thumbnail ICY Active Cells SDK, Workbooks (Icy), Icy Protocols SDK Component Semi-automated Free and open source Cell segmentation, Active contours Bioimage informatics
Active Contours Software Icy Component Automated Free and open source Active contours Microscopy
ADAPT Software ADAPT logo ImageJ Component Automated Free and open source Analysis, Object detection Fluorescence microscopy
Adaptive histogram equalization Software need a thumbnail Histogram, CLAHE, Histogram Equalization Component Automated I do not know Image processing Imaging
Adaptive Pixel Representation Software Collection I do not know Conversion Bioimage informatics
Adaptive Thresholding (EBImage) Software Component Automated Free and open source Adaptative thresholding, Cell segmentation
Adipocyte quantification ImageJ by Baecker Software ImageJ Workflow Automated Free and open source Cell segmentation Digital histology
Adipocyte quantification MATLAB Software MATLAB Workflow Semi-automated Free but not open source Cell segmentation Digital histology