Image registration

Image registration is the process of transforming different sets of data into one coordinate system. Registration is necessary in order to be able to compare or integrate the data obtained from different sensors/imaging modalities, at different times, from different view points, etc. . Registration can be based on correspondence established between the landmarks or feature points. Alternatively, some similarity/distance metric is established between the image intensity maps to navigate the registration process.

Synonyms
Image alignment

QuantiFish

Workflow
Description

QuantiFish is a quantification program intended for measuring fluorescence in images of zebrafish, although use with images of other specimens is possible. This package is geared towards analysis of fluorescent infection models. The software is designed to automate processing of images of single fish, and outputs results as a .csv file. Alongside measures of total fluorescence above a threshold, this package also introduces several measures for dissemination and distribution of fluorescence throughout the specimen.

has topic
Imaging
In-vivo imaging
Light microscopy
Fluorescence microscopy
has function
Image registration
Image thresholding
Object counting
Object detection
QuantiFish User Interface

Epina Image Lab

Collection
Description

Epina ImageLab is a Microsoft Windows-based multisensor imaging tool for processing and analyzing hyperspectral images. It is a modular system consisting of a basic engine, a graphical user interface, a chemometrics toolbox and optional user-supplied modules. It supports the most important spectroscopic imaging techniques, such as UV/Vis, infrared, Raman, THz, optical emission/absorption, and mass spectrometry. On top of that Epina ImageLab enables the user to merge hyperspectral images with maps of physical properties and conventional high-resolution color photos. 

has topic
Multimodal imaging
Spectroscopy
has function
Alignment construction
Image registration
Image analysis
Image processing
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Image registration in Matlab with Image Processing Toolbox

Collection
Component
Description

Align two images using intensity correlation, feature matching, or control point mapping

Together, Image Processing Toolbox™ and Computer Vision Toolbox™ offer four image registration solutions: interactive registration with a Registration Estimator app, intensity-based automatic image registration, control point registration, and automated feature matching. 

has topic
Multimodal imaging
has function
Alignment construction
Image registration
Affine registration
Rigid registration
Deformable registration
Feature-based registration
Frequency analysis
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Automated workflow for parallel Multiview Reconstruction

Workflow
Description

Automated workflow for performing multiview reconstruction of large multiview, multichannel, multiillumination time-lapse SPIM data on a high performance computing (HPC) cluster or on a single workstation. 

has topic
Light-sheet microscopy
has function
Image registration
Image deconvolution
Selective plane illumination microscopy reconstruction
Image processing
Drift correction

MSRC Registration Toolbox

Component
Description

This python toolbox performs registration between 2-D microscopy images from the same tissue section or serial sections in several ways to achieve imaging mass spectrometry (IMS) experimental goals.

This code supports the following works and enables others to perform the workflows outlined in the following works, please cite them if you use this toolbox:

  • Advanced Registration and Analysis of MALDI Imaging Mass Spectrometry Measurements through Autofluorescence Microscopy, 10.1021/acs.analchem.8b02884

  • Next Generation Histology-directed Imaging Mass Spectrometry Driven by Autofluorescence Microscopy, 10.1021/acs.analchem.8b02885

has topic
Fluorescence microscopy
Multimodal imaging
has function
Image registration
Feature-based registration
need a thumbnail
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