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Name Category Image requires Type interaction level License/Openness has function has topic
Adiposoft Software ImageJ Workflow Automated Free and open source Cell segmentation, Image thresholding, Watershed segmentation Digital histology
Advanced Cell Classifier Software Advanced Cell Classifier Matlab Image Processing Toolbox, Matlab compiler runtime Collection Automated, Manual, Semi-automated Free and open source Image analysis, Image classification, Image annotation, Image visualisation Bioimage informatics, Machine learning
affine (EBImage) Software need a thumbnail EBImage Component Automated I do not know Affine transformation Bioimage informatics
Affine transformation software Software Component Automated Free and open source Affine transformation, Image processing
AIR tools II Software need a thumbnail Collection Automated Free and open source Image reconstruction Bioimage informatics
Aivia - Aivia Cloud - Aivia Web Software Collection, Workflow Automated, Manual, Semi-automated Commercial Analysis, Frequency analysis, Image analysis, Colocalisation analysis, Object-based colocalisation, Pixel-based colocalisation, Filament tracing, Image feature detection, Image segmentation, Cell segmentation, Pixel classification, Neuron image analysis, Object classification, Object counting, Texture extraction, Object tracking, Cell tracking, Particle tracking, Annotation, Classification, Editing, Image deconvolution, Visualisation, Image visualisation, Volume rendering, Plotting Machine learning
Align Image by line ROI Software Fiji Component Manual Free and open source Image registration Bioimage informatics
Align slices in stack Software ImageJ Component Automated Free and open source Image registration
Alignment of FIBSEM or SBFSEM images Software need a thumbnail Fiji, Open Virtual stack in Fiji, TrakEM2, Create new TrakEM project in Fiji, import images into TrakEM, Linear Stack Alignment with SIFT (ImageJ) Component Semi-automated
Allen Mouse Brain Atlas (CCFv3) Dataset Annotation Workflow for Building 3D Structures.
Amira Software Amira's interface Collection Automated, Manual, Semi-automated Commercial Image registration, Analysis, Visualisation Multimodal imaging
Amira / Avizo Xtra library Software Amira logo Amira Collection, Workflow Automated, Manual, Semi-automated Commercial
Anaglyph for Red Cyan glasses Software ImageJ Component Automated Free and open source Image visualisation
Analysis of filopodia dynamics Training Material
Analysis of Microtubule Orientation: Tracking with ImageJ, Directionality Analysis with Matlab Training Material
Analyze 12.0 Software Collection Semi-automated Commercial, I do not know
Analyze Complex Roots Tool Software Concentric circles on the mask of a root, created by the Analyze Complex Roots Tool Fiji Workflow Automated, Semi-automated Free and open source Image analysis, Image segmentation Bioimage informatics
Analyze Particles Software need a thumbnail ImageJ, Fiji Component Automated Free and open source Image feature detection Microscopy
Analyze Skeleton 2D time series Software need a thumbnail ImageJ, ImageJ Analyze Skeleton Component Automated Free and open source Skeletonisation Bioimage informatics
Analyze Spheroid Cell Invasion In 3D Matrix Software need a thumbnail MorphoLibJ Workflow Semi-automated Free and open source Cell segmentation, Object counting Live sample imaging, Widefield microscopy, Fluorescence microscopy